If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ), 'gf_id' => 'HOM05D000990', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000990' ), 'data_identifier' => 'HOM05D000990', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000990', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14650' => 'bna', 'A02p31540' => 'bna', 'A03p07350' => 'bna', 'A03p54300' => 'bna', 'A04p11790' => 'bna', 'A04p14490' => 'bna', 'A05p45160' => 'bna', 'A07p19850' => 'bna', 'A07p20750' => 'bna', 'A07p31720' => 'bna', 'A09p00570' => 'bna', 'A10p23240' => 'bna', 'Aa31LG11G13790' => 'aar', 'Aa31LG5G12830' => 'aar', 'Aa31LG5G620' => 'aar', 'Aa31LG6G6640' => 'aar', 'Aa31LG9G16820' => 'aar', 'Aa31LG9G580' => 'aar', 'Actinidia13400' => 'ach', 'Actinidia16146' => 'ach', 'Actinidia17604' => 'ach', 'Actinidia18080' => 'ach', 'Actinidia20890' => 'ach', 'Actinidia22111' => 'ach', 'Actinidia26269' => 'ach', 'Actinidia27376' => 'ach', 'Actinidia30580' => 'ach', 'Actinidia33745' => 'ach', 'Ah.05g180420' => 'amhyb', 'Ah.07g201010' => 'amhyb', 'Ah.10g038180' => 'amhyb', 'AL2G28150' => 'aly', 'AL3G11570' => 'aly', 'AL6G26630' => 'aly', 'AL6G53150' => 'aly', 'AL7G30010' => 'aly', 'AL7G48080' => 'aly', 'AL7G51530' => 'aly', 'Aqoxy3G03717' => 'aox', 'Aqoxy5G00912' => 'aox', 'Aqoxy7G00264' => 'aox', 'Aqoxy7G03427' => 'aox', 'arahy.Tifrunner.gnm1.ann1.32G3LI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IM268' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3SJ0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ACT9HX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CDI7P2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5ZHEK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVR1A9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MU4MH9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPL7HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2V195' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TZF9D3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U48FM1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIU4QK' => 'arhy', 'AT1G69085' => 'ath', 'AT3G02290' => 'ath', 'AT4G00335' => 'ath', 'AT4G23450' => 'ath', 'AT5G15790' => 'ath', 'AT5G38895' => 'ath', 'AT5G41350' => 'ath', 'ATR0582G151' => 'atr', 'ATR0605G008' => 'atr', 'ATR0680G279' => 'atr', 'ATR0827G084' => 'atr', 'Atru.chr11.1587' => 'acertr', 'Atru.chr12.1438' => 'acertr', 'Atru.chr5.523' => 'acertr', 'Atru.chr8.647' => 'acertr', 'Atru.chr9.2158' => 'acertr', 'AUR62004385' => 'cqu', 'AUR62009480' => 'cqu', 'AUR62010711' => 'cqu', 'AUR62022590' => 'cqu', 'AUR62023159' => 'cqu', 'AUR62027256' => 'cqu', 'BcaB01g02241' => 'bca', 'BcaB01g05027' => 'bca', 'BcaB02g07897' => 'bca', 'BcaB03g15457' => 'bca', 'BcaB06g27256' => 'bca', 'BcaB06g27615' => 'bca', 'BcaC02g08965' => 'bca', 'BcaC02g09675' => 'bca', 'BcaC04g18937' => 'bca', 'BcaC04g24182' => 'bca', 'BcaC05g30342' => 'bca', 'BcaC08g44520' => 'bca', 'BcaC08g45917' => 'bca', 'BcaC08g46366' => 'bca', 'BcaC08g46368' => 'bca', 'BcaC09g51000' => 'bca', 'BcaNung01439' => 'bca', 'BolC1t01742H' => 'bol', 'BolC1t03415H' => 'bol', 'BolC2t12339H' => 'bol', 'BolC3t13359H' => 'bol', 'BolC4t25888H' => 'bol', 'BolC4t26130H' => 'bol', 'BolC4t26432H' => 'bol', 'BolC5t35092H' => 'bol', 'BolC6t37055H' => 'bol', 'BolC6t37161H' => 'bol', 'BolC6t38824H' => 'bol', 'BolC7t45769H' => 'bol', 'BolC9t52964H' => 'bol', 'BolC9t58971H' => 'bol', 'BraA01t01405Z' => 'bra', 'BraA03t10059Z' => 'bra', 'BraA03t14492Z' => 'bra', 'BraA04t16845Z' => 'bra', 'BraA04t17094Z' => 'bra', 'BraA07t29689Z' => 'bra', 'BraA07t29767Z' => 'bra', 'BraA07t30799Z' => 'bra', 'BraA09t35703Z' => 'bra', 'BraA10t44392Z' => 'bra', 'C01p18150' => 'bna', 'C01p34470' => 'bna', 'C03p08540' => 'bna', 'C04p43110' => 'bna', 'C04p45470' => 'bna', 'C04p48390' => 'bna', 'C06p18430' => 'bna', 'C06p19700' => 'bna', 'C06p37190' => 'bna', 'C07p52680' => 'bna', 'C09p00290' => 'bna', 'C09p61310' => 'bna', 'CAN.G78.98' => 'can', 'CANSAT21G0814' => 'cansat', 'CANSAT56G1479' => 'cansat', 'CANSAT64G2022' => 'cansat', 'CANSAT64G2486' => 'cansat', 'CARHR061970' => 'chi', 'CARHR076250' => 'chi', 'CARHR197540' => 'chi', 'CARHR212970' => 'chi', 'CARHR230780' => 'chi', 'CARHR248420' => 'chi', 'CARHR263640' => 'chi', 'Carub.0002s1571' => 'cru', 'Carub.0003s0140' => 'cru', 'Carub.0006s1394' => 'cru', 'Carub.0006s3691' => 'cru', 'Carub.0007s1764' => 'cru', 'Carub.0007s3413' => 'cru', 'Carub.0007s3695' => 'cru', 'Ca_06904_v3' => 'car', 'Ca_10936_v3' => 'car', 'Ca_23608_v3' => 'car', 'Cc02_g38270' => 'ccan', 'Cc07_g04490' => 'ccan', 'Cc08_g14960' => 'ccan', 'Cc11_g11700' => 'ccan', 'CDE04G2268' => 'cde', 'CDE05G0631' => 'cde', 'CDE08G0539' => 'cde', 'CDE10G0525' => 'cde', 'Cfa003900' => 'cfa', 'Cfa007696' => 'cfa', 'Cfa008855' => 'cfa', 'Cfa012206' => 'cfa', 'Ciclev10005792m.g' => 'ccl', 'Ciclev10012668m.g' => 'ccl', 'Ciclev10022220m.g' => 'ccl', 'Ciclev10022320m.g' => 'ccl', 'Ciclev10032818m.g' => 'ccl', 'CiPaw.01G063600' => 'cil', 'CiPaw.02G032800' => 'cil', 'CiPaw.03G082900' => 'cil', 'CiPaw.04G052200' => 'cil', 'CiPaw.05G100100' => 'cil', 'CiPaw.06G093900' => 'cil', 'CiPaw.11G132900' => 'cil', 'CiPaw.12G091500' => 'cil', 'ClCG01G002540' => 'cla', 'ClCG05G001420' => 'cla', 'ClCG11G004970' => 'cla', 'COL.COLO4_10255' => 'col', 'COL.COLO4_27842' => 'col', 'COL.COLO4_34045' => 'col', 'COL.COLO4_34493' => 'col', 'Cpa.g.sc11.28' => 'cpa', 'Cpa.g.sc214.8' => 'cpa', 'Cre08.g371400' => 'cre', 'CsaV3_3G008810' => 'csa', 'CsaV3_5G002650' => 'csa', 'CsaV3_5G038700' => 'csa', 'CSS0005832' => 'camsi', 'CSS0008487' => 'camsi', 'CSS0009094' => 'camsi', 'CSS0039996' => 'camsi', 'DCAR_008369' => 'dca', 'DCAR_011020' => 'dca', 'DCAR_025201' => 'dca', 'DCAR_025454' => 'dca', 'Dinv17531' => 'din', 'Dinv20145' => 'din', 'Dinv33863' => 'din', 'Dinv34038' => 'din', 'Dinv37622' => 'din', 'Dinv38925' => 'din', 'Dinv43840' => 'din', 'Duzib068G0730' => 'dzi', 'Duzib084G0357' => 'dzi', 'Duzib133G0861' => 'dzi', 'Duzib138G0871' => 'dzi', 'Duzib138G1076' => 'dzi', 'Duzib205G0654' => 'dzi', 'Duzib248G1283' => 'dzi', 'Duzib251G0506' => 'dzi', 'Duzib268G0120' => 'dzi', 'ECA233G0835' => 'eca', 'ECA238G0850' => 'eca', 'ECA246G0727' => 'eca', 'ECA246G1325' => 'eca', 'ECA246G4335' => 'eca', 'EL10Ac1g00393' => 'bvu', 'EL10Ac2g04441' => 'bvu', 'EL10Ac5g12800' => 'bvu', 'Eucgr.B03564' => 'egr', 'Eucgr.B03745' => 'egr', 'Eucgr.E00115' => 'egr', 'Eucgr.E00633' => 'egr', 'Eucgr.I02063' => 'egr', 'Eucgr.L00304' => 'egr', 'FAN01G0642' => 'fan', 'FAN02G4287' => 'fan', 'FAN03G2110' => 'fan', 'FAN04G1624' => 'fan', 'FAN05G2053' => 'fan', 'FAN06G1090' => 'fan', 'FAN06G3497' => 'fan', 'FAN07G2954' => 'fan', 'FAN08G0724' => 'fan', 'FAN09G4137' => 'fan', 'FAN10G2291' => 'fan', 'FAN10G3946' => 'fan', 'FAN12G2538' => 'fan', 'FAN14G0277' => 'fan', 'FAN17G1797' => 'fan', 'FAN17G2908' => 'fan', 'FvH4_4g22510' => 'fve', 'FvH4_5g02791' => 'fve', 'FvH4_6g46360' => 'fve', 'FvH4_7g14770' => 'fve', 'Glyma.01G221000' => 'gma', 'Glyma.05G209600' => 'gma', 'Glyma.07G068900' => 'gma', 'Glyma.08G016300' => 'gma', 'Glyma.08G251300' => 'gma', 'Glyma.09G257100' => 'gma', 'Glyma.13G052000' => 'gma', 'Glyma.16G034700' => 'gma', 'Glyma.18G235300' => 'gma', 'Glyma.18G274000' => 'gma', 'Glyma.19G034700' => 'gma', 'Gohir.A03G019000' => 'ghi', 'Gohir.A04G101900' => 'ghi', 'Gohir.A07G079000' => 'ghi', 'Gohir.A07G141600' => 'ghi', 'Gohir.A07G169850' => 'ghi', 'Gohir.A07G179700' => 'ghi', 'Gohir.A08G183900' => 'ghi', 'Gohir.A11G090200' => 'ghi', 'Gohir.A12G230700' => 'ghi', 'Gohir.A13G085600' => 'ghi', 'Gohir.D03G149900' => 'ghi', 'Gohir.D04G141100' => 'ghi', 'Gohir.D07G084300' => 'ghi', 'Gohir.D07G147100' => 'ghi', 'Gohir.D07G176100' => 'ghi', 'Gohir.D07G186500' => 'ghi', 'Gohir.D08G202400' => 'ghi', 'Gohir.D11G094700' => 'ghi', 'Gohir.D12G231800' => 'ghi', 'Gohir.D13G084450' => 'ghi', 'Gorai.001G089900' => 'gra', 'Gorai.001G159800' => 'gra', 'Gorai.001G197000' => 'gra', 'Gorai.001G207100' => 'gra', 'Gorai.003G157200' => 'gra', 'Gorai.004G213600' => 'gra', 'Gorai.007G101200' => 'gra', 'Gorai.008G248100' => 'gra', 'Gorai.012G126100' => 'gra', 'Gorai.013G096200' => 'gra', 'GSVIVG01001107001' => 'vvi', 'GSVIVG01001586001' => 'vvi', 'GSVIVG01012252001' => 'vvi', 'GSVIVG01019385001' => 'vvi', 'GSVIVG01027002001' => 'vvi', 'GSVIVG01036545001' => 'vvi', 'HanXRQChr06g0167081' => 'han', 'HanXRQChr06g0175461' => 'han', 'HanXRQChr13g0394181' => 'han', 'HanXRQChr14g0452491' => 'han', 'HanXRQChr15g0480251' => 'han', 'HanXRQChr17g0533511' => 'han', 'HanXRQChr17g0540361' => 'han', 'HanXRQChr17g0559081' => 'han', 'Haze_08807' => 'cav', 'Haze_12512' => 'cav', 'Haze_14381' => 'cav', 'Haze_15532' => 'cav', 'Hma1.2p1_0377F.1_g139410' => 'hma', 'Hma1.2p1_0428F.1_g151040' => 'hma', 'Hma1.2p1_0474F.1_g160760' => 'hma', 'Hma1.2p1_0656F.1_g196800' => 'hma', 'Hma1.2p1_0792F.1_g218520' => 'hma', 'Hma1.2p1_1123F.1_g259410' => 'hma', 'Hma1.2p1_1494F.1_g286900' => 'hma', 'HPP92_013557' => 'vpl', 'HPP92_014782' => 'vpl', 'HPP92_020764' => 'vpl', 'HPP92_023596' => 'vpl', 'HPP92_025788' => 'vpl', 'HPP92_025796' => 'vpl', 'HPP92_028101' => 'vpl', 'HPP92_028868' => 'vpl', 'Hund11454' => 'sun', 'Hund16234' => 'sun', 'Hund16658' => 'sun', 'Hund27259' => 'sun', 'Lalb_Chr02g0158791' => 'lal', 'Lalb_Chr04g0258371' => 'lal', 'Lalb_Chr06g0174871' => 'lal', 'Lalb_Chr10g0092721' => 'lal', 'Lalb_Chr10g0096811' => 'lal', 'Lalb_Chr16g0377081' => 'lal', 'Lalb_Chr16g0390171' => 'lal', 'Lalb_Chr17g0336791' => 'lal', 'Lalb_Chr21g0318251' => 'lal', 'Lalb_Chr21g0318261' => 'lal', 'Lj1g0008297' => 'lja', 'Lj2C182T6' => 'lonja', 'Lj2g0021976' => 'lja', 'Lj3A1028T36' => 'lonja', 'Lj3g0003536' => 'lja', 'Lj4A123G18' => 'lonja', 'Lj9A585T62' => 'lonja', 'LjContig00312_ERROPOS870357g0002435' => 'lja', 'Lju361A6G24' => 'lonja', 'Lsat_1_v5_gn_2_90220' => 'lsa', 'Lsat_1_v5_gn_3_105920' => 'lsa', 'Lsat_1_v5_gn_3_138240' => 'lsa', 'Lsat_1_v5_gn_3_32580' => 'lsa', 'Lsat_1_v5_gn_3_6260' => 'lsa', 'Lsat_1_v5_gn_4_24901' => 'lsa', 'Lsat_1_v5_gn_6_5421' => 'lsa', 'Manes.01G060200' => 'mes', 'Manes.01G103500' => 'mes', 'Manes.02G021400' => 'mes', 'Manes.02G059500' => 'mes', 'Manes.05G032400' => 'mes', 'Mapoly0034s0036' => 'mpo', 'MBI16_g34535_MAGBIO' => 'mbi', 'MBI16_g34537_MAGBIO' => 'mbi', 'MBI18_g33154_MAGBIO' => 'mbi', 'MBI19_g04939_MAGBIO' => 'mbi', 'MCO12G293' => 'mco', 'MD01G1066500' => 'mdo', 'MD02G1312300' => 'mdo', 'MD06G1087300' => 'mdo', 'MD07G1134100' => 'mdo', 'MD09G1074400' => 'mdo', 'MD13G1059100' => 'mdo', 'MD13G1131900' => 'mdo', 'MD14G1108200' => 'mdo', 'MD16G1142200' => 'mdo', 'MD17G1065800' => 'mdo', 'Medtr5g046970' => 'mtr', 'Medtr6g015980' => 'mtr', 'Medtr7g016840' => 'mtr', 'Medtr8g030510' => 'mtr', 'Medtr8g098665' => 'mtr', 'MELO3C005692.2' => 'cme', 'MELO3C006098.2' => 'cme', 'MELO3C022050.2' => 'cme', 'Migut.A00746' => 'egut', 'Migut.B01522' => 'egut', 'Migut.B01775' => 'egut', 'Migut.E00036' => 'egut', 'Migut.E01189' => 'egut', 'Migut.H00585' => 'egut', 'Migut.N01453' => 'egut', 'Migut.O00381' => 'egut', 'MSTRG.13851' => 'ama', 'MSTRG.15435' => 'ama', 'MSTRG.17283' => 'ama', 'MSTRG.25623' => 'ama', 'MSTRG.2974' => 'ama', 'Nitab4.5_0000154g0170' => 'nta', 'Nitab4.5_0000583g0290' => 'nta', 'Nitab4.5_0001339g0080' => 'nta', 'Nitab4.5_0001434g0100' => 'nta', 'Nitab4.5_0001522g0070' => 'nta', 'Nitab4.5_0001541g0040' => 'nta', 'Nitab4.5_0002249g0020' => 'nta', 'Nitab4.5_0010228g0010' => 'nta', 'Nitab4.5_0013970g0020' => 'nta', 'Nitab4.5_0018154g0010' => 'nta', 'Nn1g01580' => 'nnu', 'Nn3g16256' => 'nnu', 'Nn3g17521' => 'nnu', 'Nn4g23521' => 'nnu', 'Nn4g26151' => 'nnu', 'Nn6g33354' => 'nnu', 'Oeu007081.1' => 'oeu', 'Oeu019394.1' => 'oeu', 'Oeu031838.1' => 'oeu', 'Oeu033410.1' => 'oeu', 'Oeu042335.1' => 'oeu', 'Oeu049877.1' => 'oeu', 'Oeu062181.2' => 'oeu', 'Os01g0926200' => 'osa', 'Os03g0598700' => 'osa', 'Os10g0142100' => 'osa', 'Os11g0294600' => 'osa', 'Os11g0629300' => 'osa', 'Peaxi162Scf00020g00913' => 'pax', 'Peaxi162Scf00020g02340' => 'pax', 'Peaxi162Scf00074g02028' => 'pax', 'Peaxi162Scf00175g00928' => 'pax', 'Peaxi162Scf00481g00724' => 'pax', 'Peaxi162Scf01197g00005' => 'pax', 'PGR004G0479' => 'pgr', 'PGR031G0887' => 'pgr', 'PGR042G1159' => 'pgr', 'PGR042G2218' => 'pgr', 'PGR119G2150' => 'pgr', 'PGSC0003DMG400000180' => 'stu', 'PGSC0003DMG400012196' => 'stu', 'PGSC0003DMG400028306' => 'stu', 'Phvul.002G291400' => 'pvu', 'Phvul.003G039100' => 'pvu', 'Phvul.008G026500' => 'pvu', 'Phvul.008G027500' => 'pvu', 'Phvul.008G060600' => 'pvu', 'Phvul.010G100500' => 'pvu', 'Potri.001G068700' => 'ptr', 'Potri.001G101700' => 'ptr', 'Potri.002G161500' => 'ptr', 'Potri.003G129900' => 'ptr', 'Potri.003G161600' => 'ptr', 'Potri.004G114800' => 'ptr', 'Potri.010G140300' => 'ptr', 'Potri.014G087000' => 'ptr', 'Potri.017G100100' => 'ptr', 'Pp3c23_21240' => 'ppa', 'Pp3c24_11700' => 'ppa', 'PRCOL_00005727' => 'pco', 'Prupe.1G213500' => 'ppe', 'Prupe.1G290700' => 'ppe', 'Prupe.2G173400' => 'ppe', 'Prupe.3G248900' => 'ppe', 'Prupe.5G103600' => 'ppe', 'Psat1g065160' => 'psa', 'Psat3g107440' => 'psa', 'Psat3g203320' => 'psa', 'Psat4g156240' => 'psa', 'Psat7g031560' => 'psa', 'PSO017G0194' => 'pso', 'PSO017G1295' => 'pso', 'PSO017G6220' => 'pso', 'PSO170G6489' => 'pso', 'PSO478G0400' => 'pso', 'PSO478G2434' => 'pso', 'PSO478G2892' => 'pso', 'PSO732G0707' => 'pso', 'PSO782G5022' => 'pso', 'QL02p065865' => 'qlo', 'QL03p048936' => 'qlo', 'QL03p073379' => 'qlo', 'QL04p054082' => 'qlo', 'QL12p032490' => 'qlo', 'RcHm_v2.0_Chr1g0356711' => 'rch', 'RcHm_v2.0_Chr2g0146111' => 'rch', 'RcHm_v2.0_Chr2g0164901' => 'rch', 'RcHm_v2.0_Chr4g0428741' => 'rch', 'RcHm_v2.0_Chr4g0437831' => 'rch', 'RcHm_v2.0_Chr5g0014691' => 'rch', 'RcHm_v2.0_Chr7g0197151' => 'rch', 'Rhsim02G0233400' => 'rsi', 'Rhsim08G0077300' => 'rsi', 'Rhsim09G0124700' => 'rsi', 'Rhsim10G0056500' => 'rsi', 'Rhsim12G0016300' => 'rsi', 'RhsimUnG0160300' => 'rsi', 'Sabra01G0048000' => 'sbr', 'Sabra01G0076700' => 'sbr', 'Sabra03G0117400' => 'sbr', 'Sabra04G0071300' => 'sbr', 'Sabra10G0108400' => 'sbr', 'Sabra14G0063100' => 'sbr', 'Sabra17G0086300' => 'sbr', 'SalBow1G0312' => 'sbo', 'Sc01g0003510' => 'sci', 'Sc10g0000590' => 'sci', 'Sc11g0008810' => 'sci', 'Sc22g0005510' => 'sci', 'Sed0005189' => 'sed', 'Sed0007744' => 'sed', 'Sed0013681' => 'sed', 'Sed0014999' => 'sed', 'Sed0020163' => 'sed', 'SEGI_20335' => 'sgi', 'SEGI_28916' => 'sgi', 'SEGI_31219' => 'sgi', 'SEGI_32266' => 'sgi', 'SEGI_36910' => 'sgi', 'SGA_v2.0_scaffold154G37127' => 'sas', 'SGA_v2.0_scaffold173G39164' => 'sas', 'SGA_v2.0_scaffold43G16405' => 'sas', 'SGA_v2.0_scaffold4G02356' => 'sas', 'SGA_v2.0_scaffold52G19113' => 'sas', 'SGA_v2.0_scaffold95G28826' => 'sas', 'SGA_v2.0_scaffold96G28925' => 'sas', 'SMO361G0772' => 'smo', 'Solyc01g094840.3' => 'sly', 'Solyc02g065720.3' => 'sly', 'Solyc02g089240.3' => 'sly', 'Solyc03g096005.1' => 'sly', 'Solyc05g012010.3' => 'sly', 'Solyc08g081300.4' => 'sly', 'Sopen01g038620' => 'spe', 'Sopen02g015940' => 'spe', 'Sopen02g034030' => 'spe', 'Sopen05g006770' => 'spe', 'Sopen08g029610' => 'spe', 'Sp3g01350' => 'spa', 'Sp5g24180' => 'spa', 'Sp6g00400' => 'spa', 'Sp6g28330' => 'spa', 'Sp7g00590' => 'spa', 'Sp7g03010' => 'spa', 'Sp7g21350' => 'spa', 'SpUn0010_0070' => 'spa', 'TAR371G1116' => 'tar', 'TAR374G0179' => 'tar', 'TAR374G1510' => 'tar', 'TAR375G0124' => 'tar', 'TAR629G0419' => 'tar', 'TAR629G1383' => 'tar', 'THA.LOC104802986' => 'tha', 'THA.LOC104814651' => 'tha', 'THA.LOC104817919' => 'tha', 'THA.LOC104820976' => 'tha', 'THA.LOC104821994' => 'tha', 'THA.LOC104823591' => 'tha', 'THA.LOC104823880' => 'tha', 'THA.LOC104825456' => 'tha', 'THA.LOC104827138' => 'tha', 'Thecc.01G356600' => 'tca', 'Thecc.02G190900' => 'tca', 'Thecc.02G325700' => 'tca', 'Thecc.03G281800' => 'tca', 'Thecc.04G106300' => 'tca', 'Thhalv10014574m.g' => 'esa', 'Thhalv10019777m.g' => 'esa', 'Thhalv10021465m.g' => 'esa', 'Thhalv10026387m.g' => 'esa', 'Thhalv10027926m.g' => 'esa', 'Thhalv10027931m.g' => 'esa', 'Thhalv10028991m.g' => 'esa', 'TPR.G12876' => 'tpr', 'TPR.G15961' => 'tpr', 'TPR.G17913' => 'tpr', 'TPR.G23382' => 'tpr', 'TPR.G37735' => 'tpr', 'TPR.G38558' => 'tpr', 'TWI23G0982' => 'twi', 'TWI32G0202' => 'twi', 'TWI34G1806' => 'twi', 'TWI38G2029' => 'twi', 'TWI39G0210' => 'twi', 'TWI60G0607' => 'twi', 'TWI79G0648' => 'twi', 'unitig_0.g2855' => 'ugi', 'unitig_52.g17632' => 'ugi', 'unitig_62.g23393' => 'ugi', 'unitig_744.g23985' => 'ugi', 'unitig_748.g8416' => 'ugi', 'unitig_88.g27620' => 'ugi', 'vmacro01011' => 'vma', 'vmacro05614' => 'vma', 'vmacro10442' => 'vma', 'vmacro11387' => 'vma', 'vmacro13261' => 'vma', 'vmacro18127' => 'vma', 'VMungo0251G0478' => 'vmu', 'VMungo1215G2449' => 'vmu', 'VMungo1383G0376' => 'vmu', 'VMungo1383G0893' => 'vmu', 'VMungo1383G2101' => 'vmu', 'Zm00001eb026420' => 'zma', 'Zm00001eb049930' => 'zma', 'Zm00001eb089610' => 'zma', 'Zm00001eb142740' => 'zma', 'Zm00001eb166460' => 'zma', 'Zm00001eb185170' => 'zma', 'Zm00001eb194790' => 'zma', 'Zm00001eb224110' => 'zma', 'Zm00001eb238630' => 'zma', 'Zm00001eb259210' => 'zma', 'Zm00001eb286250' => 'zma' ) $gf_id = 'HOM05D000990' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000990' ) $data_identifier = 'HOM05D000990' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 3, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 4, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 4, 'lonja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 3, 'egut' => (int) 8, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 1, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 7, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 5, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb286250' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1